An example is Choas Heat, the file name is chaosheat.chd but it's folder name is chaohea and that is what MAME is looking for to run that game, it's folder name instead of the chd file name. So it would be great if ECC had an option for chd only games to use the folder name for the rom name instead of the actual file name for the rom name.
Also, dat files, using datutil, I made a dat file for the Taito GNET games, but ECC ignores them. At first I was thinking maybe it was due to MAME only uses SHA1 for chd files, so I put the CRC info into the dat file that ECC gave me to try but it didn't make a difference. So I am assuming then that ECC only looks at
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rom ()
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disk ()